PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g50035.1.p
Common NameBRADI_2g50035
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 192aa    MW: 19967.8 Da    PI: 10.4258
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g50035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-2092143256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       +y+GVr+++ +g+++AeIrdps  g  +r +lg+fgtaeeAa+a++ a+ +l+g+
  Bradi2g50035.1.p  92 HYRGVRRRP-WGKYAAEIRDPSRHG--ARLWLGTFGTAEEAAAAYDSAAFRLRGA 143
                       7********.**********96544..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.1E-3191150IPR001471AP2/ERF domain
PROSITE profilePS5103224.592150IPR001471AP2/ERF domain
SMARTSM003809.9E-3592156IPR001471AP2/ERF domain
CDDcd000181.87E-1892150No hitNo description
SuperFamilySSF541716.54E-2392151IPR016177DNA-binding domain
PfamPF008472.5E-1492142IPR001471AP2/ERF domain
PRINTSPR003671.1E-1093104IPR001471AP2/ERF domain
PRINTSPR003671.1E-10116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MSLSLGSGAD TPAPTAGALA PPMPLSLAGQ YLPLNENDSL DMVLFDVLRE ASAVSASPPL  60
APLNMQQSLL QRAIVADPGT RKAGSGKGAE RHYRGVRRRP WGKYAAEIRD PSRHGARLWL  120
GTFGTAEEAA AAYDSAAFRL RGAKALLNFP PPVVVAADVP RGAGAAAKQA GSSMDRSTSP  180
RLPHVTLYSV I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2991153466ATERF1
3gcc_A3e-2991153466ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703064e-75HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232322.11e-118PREDICTED: pathogenesis-related genes transcriptional activator PTI5-like
SwissprotO046813e-43PTI5_SOLLC; Pathogenesis-related genes transcriptional activator PTI5
TrEMBLA0A0Q3JBZ21e-134A0A0Q3JBZ2_BRADI; Uncharacterized protein
STRINGGLYMA15G08560.12e-42(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.18e-25ethylene responsive element binding factor 2